NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technolog...2329 days ago
mojolicious: a next generation web framework for the Perl programming language.
...t-in non-blocking I/O web server, supporting multiple event loops as well as optional pre-forking and hot deployment, perfect for building highly scalable web services. JSON and HTML/...2304 days ago
CGView - Circular Genome Viewer
...upplied to the program using an XML file, a tab delimited file, or an NCBI ptt file. CGView converts the input into a graphical map (PNG, JPG, or Scalable Vector Graphics format), comp...2145 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...ents the algorithm is available at: http://faculty.cse.tamu.edu/shsze/asplice. Sze SH, Pimsler ML, Tomberlin JK, Jones CD, Tarone AM. (2017) A scalable and memory-efficient algorith...2132 days ago
Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow.2071 days ago
1996 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...bsp;low time and space requirements. A parallel version of SiLiX, based on MPI, is also available in this package and has been proved to be scalable, so that its allows the study...1970 days ago
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
The Docker image is available at https://hub.docker.com/r/biodatageeks/. Supplementary information on benchmarking procedure as well as test data are publicly acces...1602 days ago
1565 days ago
Nextflow: Data-driven computational pipelines
Nextflow enables scalable and reproducible scientific workflows using software containers. It allows the adaptation of pipelines written in the most common scripting languages....1536 days ago