Results for "score"
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REAPR: a universal tool for genome assembly evaluation
...east 1000bp). Additionally, if a short insert Illumina library is also available, REAPR can combine this with the large insert library in order to score each base of the assembly. h...2960 days ago
YASS :: genomic similarity search tool
...vity (transition mutations are purine to purine [A<->G] or pyrimidine to pyrimidine [C<->T]) using different scoring schemes with bit-score and E-value evaluated accordi...2935 days ago
- ...g these matches to calculate a lineage probability index (LPI) score for each genome protein. LPI scores are inversely proportional t...e based on nucleic acid signatures. Candidates having high LPI scores are unlikely to have been ho...
2884 days ago
- ...thod confirms candidate transferred genes based on the constant relative mutability (CRM). Using CRM, the algorithm assigns a confidence score based on “unusual&rdquo...
2884 days ago
- ...tches occur in the overlapping region, the base with the better quality score is chosen.The algorithm is as...e of DNA.3.Identify the masking of the end of the read with the quality score B or # as done by CASAVA and...
2669 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on each DNA molecule and the BLAST E-value score between homologs, maximally s...2643 days ago
- ...sed format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores. Both the sequence letter and quality score are each encoded with a singl...
2569 days ago
SuRankCo: supervised ranking of contigs in de novo assemblies
SuRankCo is a machine learning based software to score and rank contigs from de novo assemblies of next gen...ns with alignments of contigs with known reference genomes and predicts scores and ranking for contigs whic...2548 days ago
Genetic-mapper: SVG Genetic Map Drawer
...file with at least the marker name (ID), linkage group (LG) and the position (POS) separeted by tabulations. Additionally a logarithm of odds (LOD score) can be provided. Any extra p...2522 days ago
- ...se blocks. So the question is: given the expected depth (quota) along both x- and y-axis, select a subset of the anchors with maximized total score.
2480 days ago
