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Results for "sed"

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• • Rahul Agarwal@raag

  

  How to merge multiple files (>10) with different length using awk? for e.g. 1st column as unique id (gene name)

  Tags: awk, merge, sed, gawk, nawk

  3527 days ago

• • Jit@jit.aber

  

  #Remove all line that start with # file: $ sed '/^#/ d' filename #line #sed #linux

  Tags: Remove, line, sed, linux

  2623 days ago

• • Rahul Nayak@rahul

  

  Remove "|" from fasta header. $ sed 's,|,_,g' -i file.fa #fasta #header #sed

  Tags: fasta, header, sed

  2495 days ago

• • Surabhi Chaudhary@surabhi

  

  Remove the unwanted characters from Fasta file: sed -e '/^[^>]/s/[^ATGCatgc]/N/g' infile.fa #sed #unwanted #illegal #remove #correct #fasta #linux

  Tags: sed, unwanted, illegal, remove, correct, fasta, linux

  2358 days ago

• • Neelam Jha@neelam

  

  Converting FASTQ to FASTA

  There are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence need...

  Tags: fasta, fastq, convert, sed, awk, seqtk, bioawk, fastx, Emboss, fastq2fasta

  2318 days ago

• • Aaryan Lokwani@aaryan

  

  Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

  Tags: fasta, otherthanATGC, replace, sed, Linux, illegal

  2157 days ago

• • Jit@jit.aber

  

  sed -i 's/2019/2020/g' test.txt test2.txt test3.txt #Find #Replace #sed

  Tags: Find, Replace, sed

  783 days ago

• • Jit@jit.aber

  

  Add ">" in front of ids. sed -e 's/^/prefix/' file #Sed #Add #>

  Tags: Sed, Add

  2608 days ago

• • Jit@jit.aber

  

  To clean up a fasta file so only first column of the header is outputted:$ awk '{print $1}' file.fa > output.fa #Sed #Clean #Header #Fasta

  Tags: Sed, Clean, Header, Fasta

  2584 days ago

• • Jit@jit.aber

  

  Append the string to fasta header. $ sed 's/>.*/&_Bacteria/' foo.in > out.fasta #Sed #Fasta #String #Append

  Tags: Sed, Fasta, String, Append

  2526 days ago

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