Results for "segments"
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Bioinformatics software for biologists in the genomics era
...ser-friendly software needed and the scripting/programming infrastructure often employed for the analysis of large numbers of genes, long genomic segments and groups of sequences. We s...3786 days ago
InfoGenomeR: Integrative reconstruction of cancer genome karyotypes
InfoGenomeR is the Integrative Framework for Genome Reconstruction that uses a breakpoint graph to model the connectivity among genomic segments at the genome-wide scale. InfoGenomeR i...1095 days ago
- .... Currently, several computational methods are available and are widely applied to detect numerical copy number aberrations (CNAs) of chromosomal segments in tumor genomes. However, th...
2153 days ago
- ...ques have been considered, cliques that are not part of a run are discarded. The extents of each run in each genome are outputted as orthologous segments. The cliques from each run ar...
2644 days ago
- ...e sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of genome segments between species or strains.It...
2633 days ago
- ...w some of the (but not all) feature types GBrowse can draw. This script should contain everything you can probably make use of (e.g. transcripts, segments, etc.) and you can try to fin...
2505 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for comparative genomics. Various processes including insertion/deleti...2359 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...an interactive web-based visalization tool tailored to facilitate small scale genome analysis. To start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest...2287 days ago
Metassembler: merging and optimizing de novo genome assemblies
Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typica...2188 days ago
genoPlotR - plot gene and genome maps project!
...n table files and blast results, as well as home-made tabular files. Features Linear representation of several segments of DNA Comparisons represented by areas between the segments (like Artemis, for example)...1970 days ago
