BOL

Results for "semi-automated"

Bookmarks

• • Priya Singh@priyasingh

  

  Sequence assembly with MIRA 4

  MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA assembles/maps reads gained by electrophoresis sequencing (aka...

  2954 days ago

• • Radha Agarkar@radhaagarkar

  

  cutadapt

  Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cleaning your data in...

  2917 days ago

• • Jit@jit.aber

  

  DarkHorse

  DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting...

  2877 days ago

• • Poonam Mahapatra@poonam

  

  WiseScaffolder

  Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffol...

  2856 days ago

• • Jit@jit.aber

  

  BRAKER: pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

  Gene finding in eukaryotic genomes is notoriously difficult to automate. The task is to design a work flow with a minimal set of tools that would reach state-of-the-art per...

  1953 days ago

• • Bulbul@bulbul

  

  Cutadapt

  Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. Cutadapt helps with th...

  2702 days ago

• • Jit@jit.aber

  

  EAGER

  The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well...

  2705 days ago

• • Neelam Jha@neelam

  

  MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation

  MyPro is an improved genomics software pipeline for prokaryotic genomes. MyPro is user-friendly and requires minimal programming skills. High-quality prokaryotic genome ass...

  2701 days ago

• • Jit@jit.aber

  

  MetaBAT: An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities

  MetaBAT, An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metageno...

  2620 days ago

• • Jit@jit.aber

  

  PBSuite: Software for Long-Read Sequencing Data from PacBio

  PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly...

  2627 days ago

• « Previous
• 1
• 2
• 3
• 4
• Next »