2660 days ago
2643 days ago
Pollux: platform independent error correction of single and mixed genomes
...ed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer errors while remaining sensitive to low coverage areas of sequ...2541 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/nc...and PacBio reads without requiring error correction, for which a highly sensitive overlapper is required.Curren...2522 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are highly sensitive to contamination making the detection of foreign DNA sequences an important part of analysis pipelines. Here we use Taxoblast,...2353 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
...or ONT reads without error correction. It also shows that minimap can be used as a read overlapper, even though it is probably not as sensitive as the more sophisticated ove...2349 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
Meraculous is a whole genome assembler for Next Generation Sequencing data geared for large genomes. It is a hybrid k-mer/read-based assembler that capitalizes on the hi...2326 days ago
Ra assembler - a de novo DNA assembler for third generation sequencing data
...ke other state-of-the-art assemblers, Ra does not have an error correction step. Instead, it relies on detecting overlaps using a very sensitive and specific overlapper ("gra...2319 days ago
xmatchview: smith-waterman alignment visualization
...ss_match (Green, P. (1994) http://www.phrap.org) uses an implementation of the Smith-Waterman algorithm for comparing DNA sequences that is sensitive. http://www.bcgsc.ca/platfor...2318 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...ilable as Github Wiki or as PDF file (Thanks to pandoc!) Please cite: Steinegger M and Soeding J. MMseqs2 enables sensitive protein sequence searching fo...2234 days ago