Results for "sequence"
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Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is 1.2.4. To cite P...2918 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...f features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does not require an...Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence alignment: Satsuma. Bioinform...2918 days ago
Hagfish - assess an assembly through creative use of coverage plots
...f de novo genome assembly or identification of structural variation in a genome re-sequencing experiment. Hagfish requires a reference sequence and a paired end re...2911 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...s and deletions. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provides explicit support for handling known-sequence SVs, e.g. mobile element inse...2911 days ago
- ...for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the ref...
2911 days ago
- ...ase can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect function...
2897 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous disp...
2886 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurat...2170 days ago
- ...tches from a reference database of amino acid sequences, then using these matches to...phylogenetic distance between database match sequences and the query genome. These...breadth of the database allows not only query sequences, but also their database mat...
2878 days ago
- ...ms rely on a strong phylogenetic signal distinguishing the transferred sequence from ancestral (vertically de...he algorithm assigns a confidence score based on “unusual” sequence divergence. A gene exhibiting...
2878 days ago
