Results for "sequence"
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...tware/bottlesim.htmlCASS Protein Sequence Simulation http://www.wyoming...imulate the evolution of protein sequences under the constraints of the...is a C++ program that simulates sequence-like data over large genomic...tware to generate samples of DNA sequences with a biallelic site under...3738 days ago
List of In-silico Binding Site Prediction Tools
...nk (PDB) by combining protein sequence, chemical structure and 3D da...rea, energy-based scores, and sequence conservation, are available t...ding residues from amino acid sequences is important for the automat...tion. Numerous structure- and sequence-based methods have been devel...3745 days ago
Perl one-liner for bioinformatician !!!
...s/ http://genomics-array.blogspot.com/2010/11/some-unixperl-oneliners-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence-file/3629 days ago
Next generation sequencing in R or bioconductor environment
...n of large sets of biological sequences. The objects and functions p...additional information about sequence ranges, such as chromosome id...ied to any ranked list of DNA sequences. Documentation rGADEM: Do...des functions to retrieve the sequences around peaks, obtain enriche...3626 days ago
Commercial and public next-gen-seq (NGS) software
...ta integrating with Lasergene Sequence Analysis software for additio...aligner. It aligns short DNA sequences (reads) to the human genome...MP - Assembles to a reference sequence. Developed with Applied Biosy...reads to the finished genome sequence. Highly repetitive elements a...3520 days ago
Software packages for next gen sequence analysis
...ta integrating with Lasergene Sequence Analysis software for additio...ighted tool that aligns short sequences to a sequence database, such...lignment of finished or draft sequence. Released as a package provid...De Novo and Reference-guided Sequence Assembly of Short Reads. By T...3244 days ago
Binding Site Prediction in Protein !
...regions in proteins by surface-mapping of phylogenetic information CRESCENDO Identification protein interaction sites. It uses sequence conservation patterns in homo...2203 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...t Software Suite: can upload sequence of BED files Genome browser:...small indels from short-read sequences, only can handle Illumina da...ED6, GFF; if using prealigned sequence data- use MACS peak caller: B...; based on different kinds of sequence info and neural networks to p...2910 days ago
Tools for Searching Repeats And Palindromic Sequences
...and C-Value Paradox ). These sequences were later characterized and...of more complex 100-200 base sequences.Segmental Duplications - Lar...e term palindrome refers to a sequence of nucleotides along a DNA (d...he complimentary stand to the sequence 5' AATCGGATTGCA 3' would be 3...2212 days ago
- ...he mapping occurs because the sequences within the raw read match or align to sequences within the reference genome....ingle DNA or RNA fragment are sequenced, but the intermediate region...Text file format for storing sequence alignments against a referenc...
2870 days ago
