BOL: Results for "sequence"

Results for "sequence"

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- Jit@jit.aber
Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2
2495 days ago
- Jit@jit.aber
Rename #non-accepted #nucleotide from sequence to 'N' $ bbmap/reformat.sh in=genome.fa out=genomeOut.fa iupacToN=t
2481 days ago
- Neelam Jha@neelam
Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size
2462 days ago
- Jit@jit.aber
#Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta
2328 days ago
- Jit@jit.aber
Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics
2326 days ago
- Jit@jit.aber
get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa
2295 days ago
- Rahul Nayak@rahul
Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools
2238 days ago
- Manisha Mishra@manisha
Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids
2204 days ago
- Manisha Mishra@manisha
Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta
2204 days ago
- Jit@jit.aber
Genome Assembly: #Scaffolding Guided by Related Genomes https://www.duo.uio.no/bitstream/handle/10852/37431/Furenes_Master.pdf?sequence=1
2141 days ago

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Results for "sequence"

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