Results for "sequence analysis"
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Machine Learning in Python Simple and efficient tools for data mining and data analysis Accessible to everybody, and reusable in various contexts Built on NumPy, SciPy, and matplotlib Open source, commercially usable - BSD license More at http://scikit-learn.org/stable/index.html2999 days ago
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/b...
2999 days ago
- LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align bi...icate the reliability of each aligned column. Use sequence quality data properly. Compa...A to proteins, with frameshifts. Compare PSSMs to sequence...
2990 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jeru...NA-seq reads. Trinity partitions the sequence data into many individual de...les the RNA-seq data into the unique sequences of transcripts, often genera...en gene (or sets of genes that share sequence...2976 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2962 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/...sciences sequencing into contiguous sequences (called contigs). One can use the sequences of different sequencing tech...ime anyway). It is the Swiss army knife of sequence...
2962 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome...2962 days ago
- ...base GC content per base N content per base quality per base sequence content per sequence GC content per sequence qual...ttp://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/3%20Analysis%20Modules/
2953 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...rom public sources) Checking sequence quality, trimming, general sequence manipulation Mapping reads t...pt discovery and differential analysis with Cufflinks Differential...A-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2942 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such...ipeline which runs in four steps: Detect overlaps in high-noise sequences using MHAP Generate corrected sequence...2925 days ago
