Results for "sequence analysis"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...Chromatin immunoprecipation analysis: ChIP-seq ChIP-seq: advantag...ntial expression analysis for sequence count data. Anders and Huber,...package called FSTpoolit for analysis of the resulting sequence rea...ioinformatics analysis of DNA sequences and other biological data in...3791 days ago
List of bioinformatics open source projects/software.
...cess to more than 150 genomic analysis tools GeWorkbench http://wi...-talk.de/ Tool for filtering sequence variants in VCF files. Networ...atabase of annotations aboute sequence variants with clinically rele...omkappa/ PromKappa (Promoter analysis by Kappa) software program us...3768 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...?source=navbarGASP Genometric Analysis Simulation Program. A softwar...re to generate samples of DNA sequences with a biallelic site under...ividual-based program for the analysis of quantitative traits with e...odel for population viability analysis (PVA). http://www.vortex9.org...3749 days ago
List of In-silico Binding Site Prediction Tools
...so available enabling further analysis. PROSURFER: http://163.43.14...ding residues from amino acid sequences is important for the automat...n structure visualization and analysis but has been used more often...tion. Numerous structure- and sequence-based methods have been devel...3755 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, and sequencing data most of the bioinformaticians mung and wrangle around ma...rs-for.html http://bioexpressblog.wordpress.com/2013/04/05/split-multi-fasta-sequence...3640 days ago
Next generation sequencing in R or bioconductor environment
...ced environment for efficient sequence management and analysis in R. It contains many speed...data. Documentation ChIP-Seq Analysis Packages Bioconductor provid...des functions to retrieve the sequences around peaks, obtain enriche...of RNA-Seq experiments is the analysis of splice junctions. The foll...3636 days ago
Commercial and public next-gen-seq (NGS) software
...MP - Assembles to a reference sequence. Developed with Applied Biosy...e genomes, and carry out post-analysis. ZOOM is developed to be high...reads to the finished genome sequence. Highly repetitive elements a...pecifically optimized for the analysis of large numbers (millions) o...3530 days ago
- Since few years miRNA has shown to play important role in t...d tools related with miRNA: miRNA Sequencing data analysis : http://tools.genxpro.n...ww.illumina.com/applications/epigenetics/small_rna_analysis.ilmn More: http://www.bioco...
3507 days ago
Apps for Busy Bioinformatics Researchers !!!
...is an iOS app that allows for the opening and analysis of DNA sequencing files - ab1...verse Complement", "Jump to", "Copy and Paste sequences", fast and end scrolling, "C...t android app that allows for the opening and analysis of DNA sequencing files - ab1...3553 days ago
- Pathway Analysis is usually performed with aim to en...mechanisms pursue by genes. Pathway Analysis is not only limited to what b...croarrayCourse/Lectures09/Pathway%20Analysis.pdf http://gettinggeneticsdo...help/search/index.html?q=Enrichment+analysis+
3507 days ago
