List of generic simulation software/tools/resource with brief description and homepage !!!
...imulate the evolution of protein sequences under the constraints of the...the evolution of recombinant DNA sequences in continuous time http://sci...t simulates highly divergent DNA sequences and protein superfamilies htt...for generating serially-sampled sequences along a tree or recombinant n...3738 days ago
List of In-silico Binding Site Prediction Tools
...D: The accurate prediction of ligand binding residues from amino acid sequences is important for the automate...al chemical binding patterns even in the absence of similarity of the sequences or the folds of the compared...3744 days ago
Next generation sequencing in R or bioconductor environment
...tion of large sets of biological sequences. The objects and functions pr...to search a set of unaligned DNA sequences for a shared motif that may f...pplied to any ranked list of DNA sequences. Documentation rGADEM: Doc...cludes functions to retrieve the sequences around peaks, obtain enriched...3625 days ago
Commercial and public next-gen-seq (NGS) software
...d epsilon-matches between two sequences; SWIFT BALSAM — a very...ent Program) for mRNA and EST Sequences. Developed by Thomas Wu and C...d epsilon-matches between two sequences. SWIFT BALSAM — a very...riation in the mappability of sequences across the genome. The second...3519 days ago
Apps for Busy Bioinformatics Researchers !!!
...ows for the opening and analysis of DNA sequencing files - ab1. It includes handy tools such as "Reverse Complement", "Jump to", "Copy and Paste sequences", fast and end scrolling, "Ch...3542 days ago
Software packages for next gen sequence analysis
...analysis pipeline for short DNA sequences produced on a Illumina Genome...ead aligner. It aligns short DNA sequences (reads) to the human genome a...e sequence or a set of reference sequences. Authors are from BCGSC. Pape...ing millions of short nucleotide sequences by progressively searching fo...3243 days ago
2714 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Reference Genome: indexed FASTA file Output: VCF files Dindel Description: (Wellcome Trust Sanger) calls small indels from short-read sequences, only can handle Illumina dat...2909 days ago
Tools for Searching Repeats And Palindromic Sequences
...retches of highly repetitive DNA sequences ( see Reassociation Kinetics...ts, and C-Value Paradox ). These sequences were later characterized and...ons of more complex 100-200 base sequences.Segmental Duplications - Larg...TAACGT 5'. With palindromes the sequences on the complimentary strands...2212 days ago
2869 days ago