Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biologica...ConSurf Identification of functional regions in proteins by surface-mapping of phylogenetic information...2216 days ago
2728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...enomics master var file Read mapping: “In addition to Sanger sequence data, reads from these high-throughput se...hon; Can identify SNPs, MNPs, short indels, and larger variants; ha...n do single, de novo, somatic reads; requires that raw reads are al...2922 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that ma...he sequence 5' CGAAGC 3' that, when reversed, still reads CGAAGC. Palindromes are impo...' CGAAGC 3', if inverted (reversed 180°), still reads C...2225 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...lers generally take a file of short sequence reads and a file of quality-value a...file for the high throughput short reads is usually highly memory-inte...data inquiry, high-throughput short reads data is always initially form...ta sets containing only short reads from Illumina sequencing or a m...2699 days ago
Quick next generation sequencing (NGS) terms definition
...Most (>90%) of paired-end reads are sampled from no-SV region...ata set separately.concordant reads: a read pair is called c...ure produced by these type of reads is known as read-pair signatu...indicate a potential SV or a short insertion or deletion (indel).r...2536 days ago
2503 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two...g sequence isolated at random from a cDNA library, used for identification and mapping of coding sequences, for disc...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq...irectly from raw NGS sequence reads by counting unique k-mer...ird-generation long and noisy reads (10 kbp) using a dimensionali...classification of metagenomic reads to known bacterial genomes us...mer search; LCA assignment of short r...2385 days ago