Results for "short reads mapping"
Top-level pages
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C&nb...b.h... yeschecking whether byte ordering is bigendian... nochecking for short... yeschecking size of short.....2232 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n/...es into sets with mapped and unmapped reads: samtools view -F4 sample.ba...ut -d' ' -f1 < your_file To count reads in a all .fastq.gz files in y...fastq read length distribution: cat reads.f...
2231 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, for example "GapFiller: a de...to fill the gap within paired reads" or "Toward almost closed gen...local re-assemblies using 454 reads. We used GAPresolution but it...of interest, and the set S of reads those contigs contain. Let C...2179 days ago
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&...2196 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 4096 Jun 15 12:15 lib -...-s file-of-filenames, full path to long sequence reads or MPET pairs [see below] (Multi-FASTA/fastq format, required) -m MPET reads (...2165 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extens...32.118.212/thorfinn/realSFS/ Single-sample Aligned reads Software for SNP and genotype...p://samtools.sourceforge.net/ Multi-sample Aligned reads P...2110 days ago
- It's been a while since I last installed BLAT and when I went to the download directory at U...64-redhat-linux-gnu However, what BLAT requires is the 'short...ng the command: echo $MACHTYPE should give the correct short f...
2077 days ago
Bioinformatics Training Courses At RASA LSI
RASA conducts comprehensive Life Science skill development training courses in Pune, India f...cial for working professionals, students, researcher for enhancements of the skills in short d...1656 days ago
Frequent parameters for bioinformatics tools !
Third party executable parameters and options....curacy: 70 Pbalign.task_options.no_split_subreads: false Genomic_consensus.tas...(ABR) --input_type contig bowtie2 (mapping) --sensitive minimap2 (mapping) -a -x map-ont sam...1299 days ago
Bioinformatics in Africa:- Part 1
The Institut Pasteur de Côte d’Ivoire was created by the N°72511 law of...sp;training in bioinformatics and genome data analysis. Short&s...1204 days ago
