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Results for "short reads mapping"

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• • Jit@jit.aber

  

  samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

  1930 days ago

• • Rahul Nayak@rahul

  

  Long read assembly workshop https://www.melbournebioinformatics.org.au/tutorials/tutorials/pacbio/ #Long #Reads #Assembly #PacBio #Learn #Tutorial #Workshop

  1913 days ago

• • Jit@jit.aber

  

  Human genome reads http://www.bcgsc.ca/downloads/btl/ntedit/paper/human/ #human #genome #reads #data

  1910 days ago

• • Abhimanyu Singh@abhimanyu

  

  long #Pacbio sequence reads to #assemble a #bacterial genome, including correcting the assembly with short Illumina reads. http://sepsis-omics.github.io/tutorials/modules/cmdline_assembly/

  1868 days ago

• • Jit@jit.aber

  

  Get the secondary hists reads count from SAM awk '{ print $2 }' out.sam| grep "2048" | wc -l #SAM #BAM #Secondary #Hits

  1850 days ago

• • BioJoker@biojoker

  

  Genome Mapping #OneLiner https://bioinformaticsonline.com/snippets/view/39310/one-liner-for-reads-mapping

  1842 days ago

• • Abhimanyu Singh@abhimanyu

  

  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads https://github.com/kamimrcht/ELECTOR #ELECTOR #Evaluation #Correction #Error #Evaluator

  1808 days ago

• • Jit@jit.aber

  

  Nanopore sequencing and #assembly of a human genome with ultra-long reads https://www.nature.com/articles/nbt.4060

  1792 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  1636 days ago

• • LEGE@lege

  

  One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl that comes with the package. #Evaluate #Mapping #SNP

  1636 days ago

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