Results for "shotgun"
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...omic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest...ient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads”. Geno...2917 days ago
- ...n Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities Grouping large genomic fragments assembled from shotgun metagenomic sequences to deco...
2620 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MUM...
2638 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...old based on its allele proportions. In the process, they report findings regarding errors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They a...2630 days ago
- ...me. This information can be quite useful in scaffolding contigs from a shotgun assembly to guide the finishi...bsp; Assembly and sequence-composition guided finishingContigs from a shotgun assembly are typically linked...
2544 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or...agenomic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets from cu...2541 days ago
Opera: An optimal genome scaffolding program
...kipedia.org/wiki/Sequence_assembly ). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated v...2354 days ago
- ...in a variety of applications to study the genomes of maize and other plant species. In particular, Tallymer was used to index a set whole genome shotgun sequences from maize (B73) (t...
2274 days ago
ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.
ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set. Detail paper at https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3927-82200 days ago
- ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch ident...
2136 days ago
