Results for "shotgun"

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  • Poonam Mahapatra

    About me: I am a bioinformatician, working as a SRF fellow. Working on Shotgun Assembly database.

    1150 days ago

  • Ravindra Raut

    About me: ...ion of the rice genome under fungal pathogen challenges and genome duplication. Experienced in using next-generation sequencing technologies like shotgun sequencing, linked reads, and...

    1143 days ago

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  • Genome Assembly Tools and Software - PART2 !!

    ...DISCOVAR 51750 – Genome Shotgun Assembler and Variant CallerD...OS 3.1.0 – Whole Genome Shotgun AssemblerAMOS (AModular,...rge genomes from whole genome shotgun reads, or a combination of wh...equences which can be used as shotgun reads. SLiQ – Simple l...

    2689 days ago

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ResearchLabs posts

  • PIT Bioinformatics Group

    ...etrizable connectome (brain graph). - AmphoraNet: The webserver implementation of the AMPHORA2 workflow for phylogenetic analysis of metagenomic shotgun sequencing data. - AmphoraVi...

    3249 days ago

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  • Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator

    Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce genomic, metagenomic, transcriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets...

    Tags: Grinder, Biogrinder, Versatile, Omics, Shotgun, Amplicon, Sequencing, Read, simulator

    2541 days ago

  • ALPACA: A hybrid strategy for assembly of genomic DNA shotgun sequencing reads.

    ALPACA requires Celera Assembler 8.3 or later. It is recommended to build Celera Assembler from source. (Why? The pre-built binaries CA_8.3rc1 and CA8.3rc2 will work for any large data set.  Detail paper at https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-017-3927-8

    Tags: ALPACA, hybrid, strategy, assembly, genomic, DNA, shotgun, sequencing, reads

    2200 days ago