Results for "simple"
Bio-Scripts
...-sL https://cpanmin.us | $PERL_BASE/perl-5.24.1/bin/perl - --notest -l $PERL_BASE/perl-5.24.1 App::cpanminus JSON::Parse XML::Parser XML::Simple LWP LWP::Simple LWP::Protocol::https Archive:...2148 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Simple; use URI::Escape; use LWP...2920 days ago
- #!/usr/bin/env perl use strict; use warnings; use LWP::Simple; use XML::XPath; use XML::XPath::XMLParser; # Use DAS of UCSC to fetch specific sequence by its given chromosom...
2914 days ago
Extract fasta sequence from a multifasta file with coordinates
...from a directory of Fasta files my $db = Bio::DB::Fasta->new('/path/to/fasta/files/'); my @ids = $db->get_all_primary_ids; # Simple access my $seqstr = $db-...2536 days ago
Create genome scaffolding with Perl
..., KT => "T", AG => "R", AR => "A", GR => "G", CT => "Y", CY => "C", TY => "T", AT => "W", AW => "A", TW => "T", ); # if "simple" ambiguity can be found, retu...2313 days ago
Installing Busco version 4.0.6
...pc-cmd-1.02-pl526_0 perl-json-pp bioconda/noarch::perl-json-pp-4.04-pl526_0 perl-locale-maket~ bioconda/linux-64::perl-locale-maketext-simple-0.21-pl526_2 perl-module-b...1457 days ago
Installing pb-assembly on Linux !
...XML-Parser/2.44-foss-2016a-Perl-5.22.1 libGLU/9.0.0-foss-2016a XML-Simple/2.20-goolf-1.4.10-Perl-5.16.3...2038 days ago
- ...tep 7/12 : RUN apt-get install -y bioperl && apt-get install -y libstatistics-distributions-perl && apt-get install -y libterm-progressbar-simple-perl && apt-get install -...
1513 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 ---...
1446 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve...
1220 days ago
