Results for "simulate"
Blogs
Computer simulation of genetic mechanism !!
...s/cosi/ CS-PSeq-Gen A program to simulate the evolution of protein sequ...DAWG An application designed to simulate the evolution of recombinant...A biological sequence simulation program that simulates highly divergent DNA sequenc...2979 days ago
BBTools for bioinformatician !
...v. 36.59] rendomreads.sh gains the ability to simulate metagenomes. coverage=X...ting them with the other references. Simulate a jump library You can sim...-------------------------------------Mutate.shSimulate multiple mutants from a known...2275 days ago
Bookmarks
Public Databases for Bioinformatics !
...(queue, ofp): # Try without this random.seed() while True: i = queue.get() if i == 'FINISHED': return # simulate an expensive function...1143 days ago
- ...reads from a reference genome. It is able to simulate diploid genomes with SNPs and...insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substituti...ulating INDEL polymorphisms.Wgsim outputs the simulated polymorphisms, and writes th...
2877 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...fs/cosi/CS-PSeq-Gen A program to simulate the evolution of protein sequ...lDAWG An application designed to simulate the evolution of recombinant...Testing and Evaluating Software: Simulates complex SNP models with pure...osim A tool to add phenotypes to simulated genotypes http://evoplant.un...3741 days ago
Genome Assembly Tools and Software - PART1 !!
...ntly widely-used in metagenome projects. Results of extensive tests on simulated data show that MAP can be su...olution Dawg (DNA Assembly with Gaps) is an application designed to simulate the evolution of recombinant...2690 days ago
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Opportunity posts
"Advances in Molecular Dynamics of Biomolecules" December 3-4, 2013 @ JNU
...both in biology and material science, complementing experimental information. With the state-of -the –art computers, it is currently possible to simulate systems containing several th...3881 days ago
Video
IBM Research Computational Biology Center
...ther IBM Research Centers. Computational Biology (CompBio) including bioinformatics is the study of how computer systems can manage, analyze, and simulate the complex structures and pr...3906 days ago
Bio-Scripts
- # make reference for randomreads.sh # randomreads.sh part of BBTools/BBMap https://sourceforge.net/projects/bbmap/ /genetics/elbers/bbmap-38.86/randomreads.sh build=1...
932 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly2 wget https://ftp.ncbi.nlm.nih....922 days ago
Tags
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment, viz., the recoverability of the TF binding motif, accuracy of TF-DNA binding detection, the sensitivity of inferred TF-DNA bindin...Tags: ChIPulate, Python3, framework, simulate, read, counts, ChIP-seq, experiment
1872 days ago
Comments
- .... It is a versatile tool that allows users to simulate reads with different error ra...he whole genome sequencing technology. It can simulate reads with different read len...sed short read simulator that allows users to simulate reads from different sequenci...
419 days ago
Comment on "CovCal: Coverage / Read Count Calculator"
...verage G is the length of the genome L is the read length N is the number of reads For example, if you have a genome of length 5Mbp and you simulate 1,000,000 HiSeq 2000 reads (r...587 days ago
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