Results for "single-molecule physical genome mapping"
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RATT is software to transfer annotation from a reference (annotated) genome to an unannotated query genome. It was first developed to transfer annotations between different genome assembly versions. How...3012 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblie...ion Pilon requires as input a FASTA file of the genome along with one or more BAM fi...ysis to identify inconsistencies between the input genome...
3011 days ago
- Tools to create plots showing N-statistics for genome assemblies More at https://github.com/dentearl/n50PlottingTools
3011 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3011 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between diffe...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...t a program for aligning sequences to reference genome....
3011 days ago
- Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad In...lelized program for high-sensitivity, genome-wide synteny; Papaya, an all-...w.broadinstitute.org/science/programs/genome-...
3010 days ago
- flo - same species annotations lift over pipeline Lift over is the process of transferring annotations from one genome assembly to another. Usually...lift over is done because there is a new, improved genome...
3009 days ago
- NCBI Remap. This tool is conceptually similar to...n manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings. It is also available throu...p. More at http://www.ncbi.nlm.nih.gov/genome/tools/remap API http://www.nc...
3008 days ago
- Although centromeres are essential for life and are the subject of extensi...search, centromere locations in yeast genomes are difficult to infer, and...verse applications, including de novo genome assembly, deconvolution of me...of all centromeres in a single yeast genome...
3007 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalo...by running the binary with no arguments. The UCSC Genome Browser and Blat software are...lFor information about commercial licensing of the Genome...3001 days ago
