REAPR: a universal tool for genome assembly evaluation
REAPR is a tool that evaluates the accuracy of a genome assembly using mapped paired end reads, without the use of a reference genome for comparison. It can be use...eads mapped to the assembly in a BAM file. Mapping information such as the fragm...2965 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, an...ity, trimming, general sequence manipulation Mapping reads to a reference genome Manipulating SAM/BAM alignment files Visualizing data in a genome browser RNA-Seq De novo...2945 days ago
mrFAST: Micro Read Fast Alignment Search Tool
mrFAST is a read mapper that is designed to map short reads to reference genome with a special emphasis on th...tings. mrFAST is designed to find 'all' mappings for a given set of reads, ho...2945 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequ...2928 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analy...organisms such as bacteria, plants, animals and even complex samples (e.g. metagenomes...2943 days ago
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