Results for "single-molecule physical genome mapping"
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Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allowing e...2867 days ago
- Microbiome analysis using a single application MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one...
2855 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for d...ion using data from multiple individuals.Genome STRiP looks both across and within a set of sequenced genomes to detect variation. The met...sults, but the method gains power across genomes...
2812 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between ...GFF/GTF, VCF. CrossMap is designed to liftover genome coordinates between assemblie...p;a program for aligning sequences to reference genome....
2813 days ago
- Bambus 2.0, the second generation Bambus scaffolder available as an op...Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about ge...
2833 days ago
- OrganellarGenomeDRAW is dedicated to convert genetic information stored in GenBank entries to graphical...d for the creation of high-quality, detailed circular maps of organellar genomes like the plastid genome...
2833 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to id...f the post-treatment depends on the availability of a reference genome/...
2833 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo asse...alization and quality assessment of de novo genome assemblies Citation This so...alization and quality assessment of de novo genome...
2825 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M...ll. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome...
2824 days ago
- In this exercise, a previously annotated gene will be used to measure the accuracy of d...approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE wi...prediction of initial exons in most cases. http://genome....
2823 days ago
