Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precursor to modern web applications—were easy to create...2314 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mapping to it will be mapped ambiguou...2307 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a ci...es http://www.cs.helsinki.fi/group/sysfys/software/rematch/ SNOW Gene mapping on a reference or human prote...2281 days ago
List of visualization tools for genome alignments
Genome browsers are useful not...d publication ready figure of genomes. Following are the list of genome alignment visualization tools...d visualizing sequenced human genomes http://www.svaproject.org V...v/ ZOOM Lite NGS data mapping and visualization software h...2276 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alig...ab/data/LTR_Struc.html LTR_MINER http://genomebiology.com/2004/5/10/R79/supp...mer.sourceforge.net/ REPuter http://www.genomes...2266 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...view of the workflow which includes Transcriptome/ Genome alignment, Differential expre...ering, Venn diagrams, CVA, UMI support and elastic genome...2256 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material betw...NA must enter the host nucleus, integrate into the genome, and in more complex organism...otential for genetic incompatibility with the host genome...843 days ago
Some useful Bioinformatics links
...-scale scaffolding of de novo genome assemblies based on chromatin...05-15-302 Fast and sensitive mapping of nanopore sequencing reads...ed on the FMD-index for large genomes https://github.com/lh3/ferm...oter_tutorial//Tutorial/CustomGenomes/CustomGenomes.html https://b...2234 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge...function of a human protein using straightforward physical and comparative considerati...well as insertion/deletions variants in the human genome&...2196 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of...2195 days ago