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Bioinformatics market in India
Key Topics Covered in the Report: The market size of the Indian Bioinformatics Industry , FY’2007-FY’2013 Market segmentation of India bioinformatics industry by appl...3923 days ago
- The enormous size of the loblolly pine genome having 22 billion base pairs compared to only 3 billion in the human genome. In other words, it is seven times larger than...
3713 days ago
- LASTZ is a program for aligning DNA sequences, a pairwise aligner. Originally designed to handle sequences the size of human chromosomes and from different species, it is also useful...
2954 days ago
- ...ost of the tutorial, we will be using the "in-memory" GBrowse database (no relational database required!) Later we will show how to set up a genome size database using the berkeleydb...
3013 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...run with as low as just a few kilobytes of memory. PEAR evaluates all possible paired-end read overlaps and without requiring the target fragment size as input. In addition, it imp...2966 days ago
REAPR: a universal tool for genome assembly evaluation
...put an assembly in FASTA format and paired reads mapped to the assembly in a BAM file. Mapping information such as the fragment coverage and insert size distribution is analysed to l...2965 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...e-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop compute...2944 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ct ambiguous mappings. Satsuma has parallelization built-in and is designed to run on multi-core architectures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around t...2929 days ago
Hagfish - assess an assembly through creative use of coverage plots
...experiment. Hagfish requires a reference sequence and a paired end re-sequencing data set. Hagfish has more power the larger the insert size of the paired end library is....2921 days ago
CovCal: Coverage / Read Count Calculator
...vice versa). Instructions: set the read length/configuration and genome size, then select what you want to...s N=CG/L where C = Coverage (X),L = Read length (bp), G = Haploid genome size (bp), and N = Number of reads...2181 days ago
