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Results for "small RNA-Seq"

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• • Jit@jit.aber

  

  Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

  2499 days ago

• • Rahul Agarwal@raag

  

  List of excellent scRNA-seq analysis tools- https://github.com/seandavi/awesome-single-cell

  2336 days ago

• • Rahul Agarwal@raag

  

  Complete and excellent tutorial for Single Cell Sequencing- https://hemberg-lab.github.io/scRNA.seq.course/index.html

  2336 days ago

• • Neelam Jha@neelam

  

  Reformat you fasta sequence with size. $ seqkit seq -w 50 allGenomeContacted.fa > allGenomeContacted_final.fa #Reformat #Fasta #Size

  2467 days ago

• • Manisha Mishra@manisha

  

  Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta

  2208 days ago

• • Aaryan Lokwani@aaryan

  

  Sed illegal charters from fasta. $ sed '/^[^>]/ s/[^AGTC]/N/gi' < seq.fa #fasta #otherthanATGC #replace #sed #Linux #illegal

  2143 days ago

• • Jit@jit.aber

  

  perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta #Convert #Fasta #Zero

  2137 days ago

• • Rahul Nayak@rahul

  

  Transcriptome assembly https://www.rna-seqblog.com/tag/transcriptome-assembly/ #RNA-seq #Transcriptome #Assembly

  2132 days ago

• • Abhimanyu Singh@abhimanyu

  

  Informatics for #RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial/wiki #Scripts #Assembly

  1793 days ago

• • Jit@jit.aber

  

  Transcript assembly and quantification for RNA-Seq https://github.com/mpertea/stringtie2 #Transcript #assembly

  1760 days ago

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