Results for "snp"
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Next Generation Sequencing (NGS) Tutorials
...ormatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Generation...889 SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine di...3496 days ago
Software developed in pevsner lab
...Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individu...ritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Data pediSNP: Analyze SNP Da...3508 days ago
- ...ads from a reference genome. It is able to simulate diploid genomes with SNPs and insertion/deletion (INDE...ing errors in read names. One can evaluate the accuracy of a mapper or a SNP caller with wgsim_eval.pl tha...
2882 days ago
- ...be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation disco...
2749 days ago
- ...SamtoolsReading/writing/editing/indexing/viewing SAM/BAM/CRAM formatBCFtoolsReading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence vari...
2617 days ago
- SNPGenie is a Perl script for estimating evolutionary...sequencing (NGS) single-nucleotide polymorphism (SNP) variant data. SNP reports (acceptable in a vari...nce in one FASTA file). Just run the main script, snpgenie.pl, in a directory conta...
2602 days ago
- ...It covers all steps from tissue collection, sample preparation and computer setup, through addressing biological questions with gene expression and SNP data. http://sfg.stanford.ed...
2599 days ago
- Sept. 20, 2017 Version 3.1 released. Major upgrade. Version 3.1 fixes the problems with SNP annotation that arose when NCBI discontinued use of GI numbers. Please read carefully the...
2349 days ago
- ...experience, we recommend Google Chrome. BioCircos.js provides SNP, CNV, HEATMAP, ...EXT, and HISTGRAMmodules to display genome-wide genetic variations (SNPs, CNVs and chromosome rearran...
2307 days ago
- Heap, that enables robustly sensitive and accurate calling of SNPs, particularly with a low coverage NGS d...d to the reference genome sequences in advance. To reduce false positive SNPs, Heap determines genotypes a...
2217 days ago
