GenomeTools: The versatile open source genome analysis software
The GenomeTools genome analysis system is a free collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. It is based on a C library named “libgenometools” which consists of several modules. If ...Tags: GenomeTools, versatile, open, source, genome, analysis, software
2276 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “population epigenetic framework” and can perform: (1) epigenom...Tags: EWAS, epigenome-wide, association, study, software
2234 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies crucially on the accurate calling of SNPs and genotypes. Recently developed statistical methods both improve and quantify the considerable uncertainty associated w...Tags: List, non-commercial, NGS, genotype-calling, software, tools, snv
2093 days ago
Tags: RAVEN, Reconstruction, Analysis, Visualization, Metabolic, Networks, Toolbox, software, suite, Matlab, semi-automated, reconstruction, genome-scale, models, GEMs
2016 days ago
Tags: DECIPHER, software, toolset, decipher, biological, sequences, efficiently, R
1971 days ago
Tags: Genobuntu, software, package, packages, oriented, NGS, assembly, genome
1969 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
OAT uses OrthoANI to measure the overall similarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species demarcation cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical reciprocal similarities....Tags: OrthoANI, improved, algorithm, software, calculating, average, nucleotide, identity, ANI
1968 days ago
Tags: raghavagps, gpsrdocker, docker-based, container, software, web, servers, developed, bioinformatics
1964 days ago
GenoViz: Visualization software for genomics
GenoViz provides software applications and re-usable components for data visualization and data sharing in genomics. Our flagship product is Integrated Genome Browser (IGB).For more information about IGB, visit http://bioviz.org.Source code for the project was hosted here for many years. In ...Tags: GenoViz, Visualization, software, genomics, chromosomes
1947 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporting molecule manipulation and processing, including SMILES and SDfile conversion, normalization of molecules, generation of tautomers, molecule fragmentation, calculation of various molecular properties needed in...Tags: molinspiration, broad, range, cheminformatics, software, tools, supporting, molecule, manipulation
1929 days ago