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Results for "somatic"

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• • Rahul Agarwal@raag

  

  http://bg.upf.edu/fannsdb/ #non-synonymous #SNVs #cancer #somatic #mutations

  Tags: non, SNVs, cancer, somatic, mutations

  3452 days ago

• • Rahul Agarwal@raag

  

  http://csb5.github.io/lofreq/ #somatic #mutation

  Tags: somatic, mutation

  3239 days ago

• • LEGE@lege

  

  Severus: a somatic structural variation (SV) caller for long reads

  Severus is a somatic structural variation (SV) caller for long reads (both PacBio and ONT). It is designed for matching tumor/normal analysis, supports multiple tumor samples, and produces accurate and complete somatic and germline calls. Severus takes advantage of long-read phasing and uses the ...

  Tags: Severus, somatic, structural, variation, SV, caller, long reads

  35 days ago

• • Neelam Jha@neelam

  

  ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data

  ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 samples (recommended amount - 40 since we estimate variances from the data). By "cohort" we mean samples sequenced ...

  Tags: ClinCNV, Detection, copy, number, changes, Germline, Trio, Somatic, NGS, data

  1570 days ago