DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2504 days ago
2490 days ago
QuorUM: An Error Corrector for Illumina Reads
...QuorUM is distributed as an independent software package and as a module of the MaSuRCA assembly software. Both are available under the GPL open source license at http://www.ge...2373 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...sults. We tested the software on both simulated and biological realistic data and compared its performance with similar existing software and data source. Conclusion CHSMiner is...2362 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
...n of genomic data to public repositories. Our analysis pipeline is open-source and freely available at http://sdittami.altervista.org/taxoblast and via SourceForge (https://sourceforge.net...2358 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
This is the c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C++ source code as well as two binary files. The latter were tested...2357 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...d Nanopore MinION, has become available that we used for sequencing the S. cerevisiae genome. To make use of these data, we developed a novel open-source hybrid error correction algor...2352 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
...nome using a simulation of a number of different sequencing technologies. A population sampler optionally produces evolved sequences based on source genomes and a given evolution...2347 days ago
2340 days ago
Bandage: interactive visualization of de novo genome assemblies
...es for analyzing de novo assemblies that are not possible through investigation of contigs alone. Availability and implementation: Source code and binaries are freely...2347 days ago