Results for "split%20reads"
Blogs
Various scholarships around the world !!
This page provides information on scholarships for developing countries students who are in need of scholarship to study at home and abroad. A scholarship...2816 days ago
- Abstract: Genetic testing requires screening of the entire gene, which by conventional sequencing is time consuming and expensive. Next Generation Sequencing (NGS) based...
2802 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short...2701 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable diseases requires an approach that looks at all the variant bases and types in a genome. While a PacBio de no...2606 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer than this will be broken into 6kbp pieces and mapped independently. Code: $ mapPa...2269 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference build. LiftOver can have three use cases: (1) Convert genome position from one genome as...
2159 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about an hour. You can use two cores (parameter -maxThreads=2) and you would like to...1944 days ago
Understanding reads mapping and flags !
Linear Alignment: An alignment of a read to a single reference sequence that may include insertions, deletions, skips and clipping, but may not include dire...1836 days ago
- AWK is a standard tool on every POSIX-compliant UNIX system. It’s like flex/lex, from the command-line, perfect for text-processing tasks and other scripting needs....
1834 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be executed instead of a script -n Forces your line to be called in a loop. Allows you to take l...1380 days ago
