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Results for "split%20reads"

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• • Archana Malhotra@archana

  

  LAST

  LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned colu...

  2977 days ago

• • Jit@jit.aber

  

  PRISM

  PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small inse...

  2701 days ago

• • Bulbul@bulbul

  

  LAST

  LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of...

  2692 days ago

• • Neelam Jha@neelam

  

  BBTools User Guide

  The guides describe the function, syntax, and typical use-cases of the tools; for a complete list of parameters, run the tool’s shellscript or open it with a text ed...

  2335 days ago

• • Rahul Nayak@rahul

  

  SCUBAT: Scaffolding Contigs Using Blat And Transcripts

  SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.

  2243 days ago

• • Jit@jit.aber

  

  NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore

  CoNvex Gap-cost alignMents for Long Reads (ngmlr) is a long-read mapper designed to sensitively align PacBilo or Oxford Nanopore to (large) reference genomes. It was desig...

  2200 days ago

• • Jit@jit.aber

  

  SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions

  SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to wo...

  2180 days ago

• • Jit@jit.aber

  

  LAMSA: fast split read alignment with long approximate matches

  LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster speed and good ability of handling SV events. It is well-suited to ali...

  2180 days ago

• • Jit@jit.aber

  

  Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

  Chromonomer is a program designed to integrate a genome assembly with a genetic map. Chromonomer tries very hard to identify and remove markers that are out of order in th...

  1537 days ago

• • Rahul Nayak@rahul

  

  GRIDSS: the Genomic Rearrangement IDentification Software Suite

  GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a stru...

  1447 days ago