Results for "split"
Blogs
Various scholarships around the world !!
...ning of each monthApplication Deadline: November 9th Commonwealth Split-site (PhD) Scholarships for D...your home countryCourses: Scholarships are available for pursuing Split-site (PhD)Award Details: ...2825 days ago
- ...ns of next generation sequencing based tests in multi-gene testing. We will also show how NGS based tests help to identify copy number variations, split read analysis and breakpoint...
2811 days ago
Structural variation: the hidden genomic treasure
...ds of detection in next generation sequencing data (paired end mapping, split reads, and depth of coverage)...l-4-StructuralVariants.pdfBreakSeq, structural variant genotyping using split reads Link CopySeq,...2711 days ago
Software and Tools to detect structure variation with long reads !!
...es is a structural variation caller using third generation sequencing (PacBio or Oxford Nanopore). It detects all types of SVs using evidence from split-read alignments, high-mismatc...2616 days ago
BBTools for bioinformatician !
...nly keep the paired output. BBSplit is based on BBMap, so it is a...(which can be used similarly to BBSplit) are always deterministic.&nb...-----------------------------------Splitsam.sh Splits a sam file in...nto smaller subsets (example below splits data into 8 chunks). Code...2279 days ago
- ...at is as follow: Deleted in new: Sequence intersects no chains Partially deleted in new: Sequence insufficiently intersects one chain Split in new: Sequence insuffi...
2168 days ago
CANU genome assembly parameters !
...tain many files. The most interesting ones are: *.correctedReads.fasta.gz : file containing the input sequences after correction, trim and split based on consensus evidence....1953 days ago
Understanding reads mapping and flags !
...ative of structural variation in DNA-seq and it may indicate the presence of chimeric genes in RNA-seq. In short, chimeric reads can be split in to two or more parts, each...1845 days ago
- ...s that read files line by line and split on delimiters, AWK is probabl...each file supplied. Each record is split by the FS delimiter, # which...n array with the built-in function split() n = split("foo:bar:b...' is the fourth character # Split on a delimiter n = split...
1844 days ago
Perl one-liner for beginners !
...allWords.txt > allWordsOnlyLowercase.txt Go through file, split line at each space and print words one per line. perl -ne 'print join("\n", split(/ /,$_));print("\n")' so...1389 days ago
