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Results for "split"

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• • Archana Malhotra@archana

  

  LAST

  ...pare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignment. Train...

  2986 days ago

• • Jit@jit.aber

  

  PRISM

  PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions a...

  2710 days ago

• • Bulbul@bulbul

  

  LAST

  ...pare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignment. Train...

  2701 days ago

• • Neelam Jha@neelam

  

  BBTools User Guide

  ...ata Preprocessing Guide Specific Tool Guides: BBDuk BBMap BBMask BBMerge BBNorm CalcUniqueness Clumpify Dedupe Reformat Repair Seal Split Nextera Statistics Tadpole...

  2344 days ago

• • Rahul Nayak@rahul

  

  SCUBAT: Scaffolding Contigs Using Blat And Transcripts

  SCUBAT (Scaffolding Contigs Using BLAT And Transcripts) uses any set of transcripts to identify cases where a transcript is split over multiple genome fragments and attempts to use this information to scaffold the genome.

  2252 days ago

• • Jit@jit.aber

  

  NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore

  ...ally effective at more precisely identifying the position of breakpoints stemming from structural variations. The k-mer search helps to detect and split reads that cannot be aligned...

  2209 days ago

• • Jit@jit.aber

  

  SRBreak: A Read-Depth and Split-Read Framework to Identify Breakpoints of Different Events Inside Simple Copy-Number Variable Regions

  SRBreak is a read-depth and split-read package written in R for identifying copy-number variants in next-generation sequencing datasets. Note: SBReak was designed to work for mul...

  2189 days ago

• • Jit@jit.aber

  

  LAMSA: fast split read alignment with long approximate matches

  LAMSA (Long Approximate Matches-based Split Aligner) is a novel split alignment approach with faster spe...wo-step strategy. That is, LAMSA initially splits the read into relatively lon...g a sparse dynamic programming (SDP)-based split alignment approach to handle...

  2189 days ago

• • Jit@jit.aber

  

  Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

  ...en considered against their local assembly order; and to identify scaffolds that have been incorrectly assembled according to the genetic map, and split those scaffolds.

  1546 days ago

• • Rahul Nayak@rahul

  

  GRIDSS: the Genomic Rearrangement IDentification Software Suite

  ...on caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence.

  1456 days ago