Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most genome...e easily resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Paci...3224 days ago
Simons Genome Diversity Project
Complete genome sequences from more than one hundred diverse human populations All g...re sequenced to at least 30x coverage using Illumina technology. The sequencing reads were mapped and genotyped usi...1092 days ago
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RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute a...y to process large volumes of RNA-seq reads. Trinity partitions the seque...s in parallel, tracing the paths that reads and pairs of reads take withi...ike so: Trinity --seqType fq --left reads_1.fq --right reads_2.fq --CPU...2965 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2951 days ago
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RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and or...onger chromosomal fragments using comparative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov...2951 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger....her with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on...2950 days ago