MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools, MOSAIK can align reads generated by all the major se...2906 days ago
2906 days ago
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CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequ...ames Hadfield. Coverage is calculated as C=LN/G and reads as N=CG/L where C = Coverage...p), G = Haploid genome size (bp), and N = Number of reads. Source code on GitHub.2165 days ago
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Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic l...st BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster...2868 days ago
2868 days ago
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