Results for "split reads"
Top-level pages
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's...he sequence 5' CGAAGC 3' that, when reversed, still reads CGAAGC. Palindromes are impo...' CGAAGC 3', if inverted (reversed 180°), still reads CGAAGC. The European Molecul...2212 days ago
- alignment: the mapping of a raw seq...are for aligning raw sequence reads to a reference genome. BAM F...very low probability that the reads in your sample support a TT g...depth: the number of sequence reads that pile up at the same geno...Alignment Mapping of sequence reads to a known reference sequence...
2870 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value a...sing Reference and Paired-end Reads misFinder is a tool that a...ta sets containing only short reads from Illumina sequencing or a...which are called from the NGS reads, and aligns the assembled con...2687 days ago
Quick next generation sequencing (NGS) terms definition
...Most (>90%) of paired-end reads are sampled from no-SV region...ata set separately.concordant reads: a read pair is called c...ure produced by these type of reads is known as read-pair signature.split reads: a read that can o...nto two sub-reads is called a split-read. These types of reads al...2523 days ago
- It is often necessary to import sample textbook data into R before you start wo...use the function read.xls from the gdata package. It reads from an Excel spreadsheet and returns a data f...
2490 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originate...- The development of a new clade; the splitting of a single lineage into...eration. The points at which lineages split represent ancestor taxa to th...-- The two clades resulting from the split...2463 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundanc...les of the RNA-seq paired-end reads Software (Java) https://git...irectly from raw NGS sequence reads by counting unique k-mer...ird-generation long and noisy reads (10 kbp) using a dimensionali...classification of metagenomic reads to known bacterial genomes us...2372 days ago
- When you have both Illumina and Nan...orward and reverse paired-end reads -1 <filename>...file with forward paired-end reads -2 <filename>...me> file with forward reads for mate-pair library number...not to compress the corrected reads --disable-rr disa...
2352 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED dat...ontigs and estimates the sizes of gaps between them; (ii) IMAGE uses paired-end reads to extend contigs and close g...2332 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read sel...the per-base error rate is similar to the raw input reads. Find the detail of the read...2331 days ago
