2142 days ago
Calculate some statistics for a DNA alignment with Perl
use Bio::AlignIO; use Bio::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->new(); my $alignin = Bio::AlignIO->new(-format => 'emboss', -file => 't/...2647 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ;...2296 days ago
2073 days ago
Installing docker for Bioinformatics on Ubuntu !
...he Docker Hub for images start Start one or more stopped containers stats Display a live stream of container(s) resource usage statistics stop Stop one or mo...1511 days ago
Commands to install Statistics::R module in Ubuntu !
$ sudo apt-get install libstatistics-r-perl Reading package lists......ackages will be installed: libstatistics-r-perl r-base r-base-html 0.../ubuntu bionic/universe amd64 libstatistics-r-perl all 0.24-1 [23.3 kB]...previously unselected package libstatistics-r-perl. Preparing to unpack...1509 days ago
1507 days ago
1213 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/picard....1334 days ago
1213 days ago