RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Chimeric contig correction GFF lift-over Structural variant calling with and inte...1843 days ago
RaGOO: Fast Reference-Guided Scaffolding of Genome Assembly Contigs
...nute and the whole pipeline with SV calling takes ~2 minutes. Intact ordering and orienting of contigs. Misassembly correction GFF lift-over Structural variant calling with and inte...1651 days ago
1595 days ago
Kevler: Reference-free variant discovery in large eukaryotic genomes
...k-mer abundance based method calls single nucleotide variants (SNVs), multinucleotide variants (MNVs), insertion/deletion variants (indels), and structural variants (SVs) simultaneously...1558 days ago
SvABA: Structural variation and indel detection by local assembly
SvABA is a method for detecting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Grap...1516 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by...1511 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various loca...1460 days ago
Synteny and Rearrangement Identifier (SyRI)
...RI. SyRI identifies syntenic path (longest set of co-linear regions), structural rearrangements (inversions, t...tions), local variations (SNPs, indels, CNVs etc) within syntenic and structural rearrangements, and un-aligne...1460 days ago
GRIDSS: the Genomic Rearrangement IDentification Software Suite
...tware suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina...1448 days ago
1436 days ago