Results for "structural and sequence variation"
Bookmarks
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing r...SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT. Ind...ng technologies, low-coverage and exome) in the 1000 Genomes Pr...he growing interest in larger structural variant (SV) discovery, MOS...2900 days ago
- Stampy is a package for the mapping of short reads fro...ncluding those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in...
2900 days ago
- ...an be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence variation may affect functional and structural features of nucleosomes. To...
2887 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs") derived from (often unintentionally) mixed-species...pools. It allows the simultaneous display of GC content, coverage, and taxon...
2876 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to...ctions: set the read length/configuration and genome size, then select what...Written by Stephen Turner, based on the Lander-Wa...ength (bp), G = Haploid genome size (bp), and N = N...2160 days ago
- DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically a...stance between database match sequences and the query genome. These scores are...atabase allows not only query sequences, but also their database mat...s of phylogenetic granularity and prote...
2868 days ago
- Horizontal gene transfer (HGT), the transfer of genetic materia...enetic signal is usually weak and the nucleotide composition is...al microbiology, where understanding the emergence of new virulent a...ased on “unusual” sequence divergence. A gene exhibiting...
2868 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords: samto...sp; Updated to use samtools 1.1 and bcftools 1.2. &nbs...ce tool used in next-generation sequence analysis. This primer provides an introduction to SAMtools, and is geared towards those new to next-generation sequence...
2867 days ago
- Reads simulator Wgsim is a small tool for simulating sequence reads from a reference genome. It...e to simulate diploid genomes with SNPs and insertion/deletion (INDEL) polymorphisms, and simulate reads with uniform substi...im outputs the simulated polymorphisms, and write...
2867 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take...ing homozygous haploid genomes. Use a different assembler for metagenomes and heter...
2811 days ago
