Results for "structural and sequence variation"
Top-level pages
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools includin...M, BAM or Illumina-specific ELAND format can be directly imported for...s information from PolyPhen-2 and SIFT Input: tab-delimited with col...ckground prevalence of exonic variation in the Phase 3 1000 Genomes d...2909 days ago
Tools for Searching Repeats And Palindromic Sequences
...ches of highly repetitive DNA sequences ( see Reassociation Kinetics Experiments, and C-Value Paradox ). These sequences were later characterized and placed into five categories:...r whether the nucleic acid strand is read starting from the 3' (thre...ences on the complimentary strands read...2211 days ago
- ...ignment: the mapping of a raw sequence read to a location within a ref...he mapping occurs because the sequences within the raw read match or align to sequences within the reference ge...eletion. A form of structural variation in which a DNA segment is eit...
2869 days ago
Genome Assembly Tools and Software - PART1 !!
...enerally take a file of short sequence reads and a file of quality-value as the input...SWAP-Assembler is the fastest and most efficient assemblers eve...– Local Assembly based Structural Variation Discovery tool laSV is a s...sh; Assessing Genome Assembly and Annotation Completeness with Single...2685 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those acti...blem. The steps are normally "sequence," "selection, " "iteration," and a case-type statement. In C,...Print out appropriate heading and make it pretty While not EOF do:...2659 days ago
Quick next generation sequencing (NGS) terms definition
...Therefore, in the absence of structural variants, mapping locations o...o;: (a) mapped to opposing strands where the upstream read is mapped to the forward strand and the downstream read is ma...s for a potential copy number variation (CNV).2522 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...here "hair" is the character, and "present" and "absent" are its states. cla...describe numbers of taxa, or variation in morphology. evolut...e the polarity of characters, and which is hypothesized to be less c...her clade. repetitive DNA -- Sequences of DNA that are found to be r...2462 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...orm abundances from reference sequences and RNA-seq data (k-mer based) S...mapper Minimap Lightweight and fast read mapper and read overlap...ly with error-containing long sequence (e.g., ONT or PacBio reads, d...rence-free SNP identification and estimation of phylogenetic trees u...2371 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes sever...d inverted repeats, insertion sequences, transposons and other mobile elements. PGAP: NCBI...otate Sequence in KEGG Mapper and Patho...2331 days ago
- There are several ways you can convert fastq to fasta sequences. Some methods are liste...le, so if you print the first and 2rd line of every 4 lines, you get the sequence header and sequence needed for fasta format....[-r] = Rename sequence identifiers to numbers....
2305 days ago
