Results for "structure analysis"
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methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants...2902 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visuali...throughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...
2892 days ago
- The Genome Assembly Evaluation&...rting (GAEMR) package is an assembly analysis framework composed a number o...ingle program to generate a complete analysis report, or executed individua...mat to be entered into GAEMR’s analysis pipeline, hence enabling the...
2891 days ago
- In a nutshell Anvi’o is an analysis and visualization platform for ‘omics data. Please find the me...opment. Here is the acknowledgements section of our methods paper An analysis and visualization platform fo...
2889 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...
2889 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience...2883 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords:...open-source tool used in next-generation sequence analysis. This primer provides an intr...red towards those new to next-generation sequence analysis. The primer is also designed...
2882 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. promot...no software that can take full advantage of network theory approaches for the analysis of chromatin interaction data...
2878 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired t...logy and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the n...
2876 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARS...2870 days ago
