Useful Publications and Websites for Deep Sequencing Data Analysis
...computational pipeline for the characterization of high-throughput RNA-sequencing data. Mittal & McDonald, Nucleic Acids Res, 2012 Full Text Targeted RNA sequencing reveals the de...3796 days ago
Commercial and public next-gen-seq (NGS) software
...find semiglobal non-gapped alignments based on k-mer seeds. http://bibiserv.techfak.uni-bielefeld.de/swift/biolib.is library and a set of script targeted to NGS. There are modules to:...3535 days ago
Comprehensive list of visualization tools for biological pathways
...or building, visualizing and sharing gene regulatory network models over the web http://www.biotapestry.org/ Caleydo Visual analysis framework targeted at biomolecular data. Visuali...2304 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...y and analysis, metagenomics sample assembly, targeted resequencing, exome alignment...n: sensitive, variant detection for low-depth targeted NGS data; python module or co...local database infrastructure for analysis of targeted- and whole genome re-sequenci...2925 days ago
Genome Assembly Tools and Software - PART1 !!
...nstructed repeats. Xander – Gene-targeted Metagenomic Assembler Meta...embler 20160120 – Scalable and Accurate Targeted Gene Assembly Tool SAT-Ass...ized in a synteny plot. TASR 1.6 – Targeted Assembly of Sequence Reads...2702 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...trix's Genome-Wide Human SNP Array) from raw NGS reads (k-mer based) Software (C) http://lava.csail.mit.edu/ MICADo Detection of mutations in targeted third-generation NGS data (ca...2388 days ago