2195 days ago
2096 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...graphical user interface, that can also be executed via command line. CSBFinder implements a novel methodology for the discovery, ranking, and taxonomic distribution analysis of coli...2032 days ago
Retrieving Taxonomic Information with R
...tte will introduce users to the retrieval of taxonomic information with myTAI....powerful package taxize. Nevertheless, taxonomic information retrieval has bee...tratigraphy) or to retrieve species specific taxonomic information when performing D...1724 days ago
ITIS: the Integrated Taxonomic Information System!
ITIS, the Integrated Taxonomic Information System! Here you will find authoritative taxonomic information on plants, animals, fun...America); other organizations; and taxonomic specialists. ITIS is also a p...partnership is proud to provide the taxonomic backbone to the Encyclop...1722 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...nguage designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and i...1623 days ago
CLARK: Fast, accurate and versatile sequence classification system
...cation using discriminative k-mers. Considering two distinct specific classification problems (see the article for details), namely (1) the taxonomic classification of metagenomic...1554 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
ProteoClade is a Python library for taxonomic-based annotation and quantification of bottom-up proteomic...he organisms are unspecified ahead of time or involve samples of high taxonomic complexity. Mass spectra are...1522 days ago
Dahak: benchmarking and containerization of tools for analysis of complex non-clinical metagenomes.
...ols in the dahak software suite will perform various steps in metagenomic analysis workflows including data pre-processing, metagenome assembly, taxonomic and functional classification...1500 days ago
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Contig Annotation Tool (CAT) and Bin Annotation Tool (BAT) are pipelines for the taxonomic classification of long DNA sequences and metagenome assembled genomes (MAGs/bins) of both kno...1461 days ago