3923 days ago
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3677 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
...est BLAST program. In its fastest mode, Kraken classifies 100 base pair reads at a rate of over 4.1 million reads per minute, 909 times faster than Megablast and 11 times faster than the abundance est...2883 days ago
2826 days ago
2732 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...and presence of structural variant breakpoints within reads increases mapping and alignment complexity. We describe an algorithm that is up to 20 times faster and 25% more accurate...2713 days ago
FSA: Fast Statistical Alignment
...sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This randomized inference can be over ten times faster than a direct approach...2660 days ago
Pollux: platform independent error correction of single and mixed genomes
...ta sets, we correct 94% of Illumina MiSeq errors, 88% of Ion Torrent PGM errors, 85% of Roche 454 GS Junior errors. Introduced errors are 20 to 70 times more rare than successfully c...2557 days ago
QuorUM: An Error Corrector for Illumina Reads
...de high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 × coverage Illumina data on av...2384 days ago