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UCSC Genome Browser and Blat software !
...exception of items built from the following source code directories, which are freely available for all uses: - kent/src/utils (includes big* tools) - kent/src/lib - k...2995 days ago
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REAPR: a universal tool for genome assembly evaluation
...also available, REAPR can combine this with the large insert library in order to score each base of the assembly. http://www.sanger.ac.uk/science/tools/reapr2947 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...ial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such as HOMER. Setting up...2927 days ago
YASS :: genomic similarity search tool
...eic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuristic pairwise local alignment tools for DNA sequences (FASTA, BLA...2921 days ago