Results for "transcript"
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Useful Publications and Websites for Deep Sequencing Data Analysis
...bMedCentral Biases in Illumina transcriptome sequencing caused by rando...es 41:21–32, 2013 PubMed Transcriptome analysis Assembly and com...ods.] Optimization of de novo transcriptome assembly from next-generat...HTS and R-Cloud for analysis of transcriptome data3807 days ago
Apps for Busy Bioinformatics Researchers !!!
...ecies, based on gene symbol search. The application provides gene and transcript cross reference information f...also contains an integrated genome browser with information on genes, transcripts, exons and SNPs. More @&nbs...3568 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ude: reference-guided and de novo genome and transcriptome assembly and analysis, met...ic mutations can be annotated with predicted transcript and protein effects using thi...tor; determines effect of variants on genes, transcripts, and protein sequence; uses...2936 days ago
- ...raw/cfb803e07900a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation table format. It generated two files1) Transcript wise chromosome location with information about transcripts (Ex: https://gist.githu...
2133 days ago
Genome Assembly Tools and Software - PART1 !!
...s. TransPS 1.1.0 – Transcriptome Post Scaffolding TransP...ost-processing of pre-assembled transcriptomes using reference based met...ly and an independently derived transcriptome assembly. Circlator 1...Identifies 3′ UTR Ends of Transcripts in de novo RNA-Seq Assemblie...2713 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA...antification of the expression of transcripts using RNA-seq data (uses&nbs...A-Skim RNA-seq quantification at transcript-level (partitions the transcr...matrix using d2S measure) of metatranscriptomic samples from NGS reads S...2398 days ago
- ...l design, quality control, read alignment, quantification of gene and transcript levels, visualization, differ...is easy as 1-2-3 with limma, Glimma and edgeR Differential gene and transcript expression analysis of RNA-se...
2378 days ago
