Results for "transferred"

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  • DarkHorse

    ...ful not only for large-scalede novo predictions of horizontally transferred proteins, but can also serve...idates having high LPI scores are unlikely to have been horizontally transferred, since they are highly conser...

    2874 days ago

  • NearHGT

    ...n algorithms rely on a strong phylogenetic signal distinguishing the transferred sequence from ancestral (vert...vents between closely related strains. The method confirms candidate transferred genes based on the const...

    2874 days ago

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  • HTTDB - Horizontally transferred transposable elements database

    Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is mediated by its own proteins and does not contribute to the survival of the host that it inhabits, they are known as...

    Tags: HTTDB, Horizontally, transferred, transposable, elements, database

    2294 days ago

  • alien_index : identify potential contaminants or horizontally transferred genes in transcriptomes.

    identify potential contaminants or horizontally transferred genes in transcriptomes. algorithm is based on alogorithm described in the following: Gladyshev, Eugene A., Matthew Meselson, and Irina R. Arkhipova. "Massive horizontal gene transfer in bdelloid rotifers." science 320.5880 (2008): 1210...

    Tags: alien_index, identify, potential, contaminants, horizontally, transferred, genes, transcriptomes

    1554 days ago

Comments

  • Comment on "List of popular bioinformatics software/tools"

    skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer

    3572 days ago