How to install Perl modules on Mac OS X in easy steps !!
...is will install the module and its dependencies. Nice, eh? Again, don’t forget the sudo. The first time you run this after upgrading CPAN, it may prompt you to co...2766 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2636 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Re...2636 days ago
Genome Assembly Tools and Software - PART1 !!
...ted gene content. FinisherSC 2.0 – A Repeat-aware tool for upgrading de-novo Assembly using Long Reads FinisherSC is a repeat-aware and scalable tool for upgrading de-novo assembly using long r...2697 days ago
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Installing Platypus on Ubuntu !
...d packages: Cython Successfully installed Cython-0.29 You are using pip version 9.0.3, however version 18.1 is available. You should consider upgrading via the 'pip install --upgrad...2031 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
Here is the command to run the tool: python finisherSC.py destinedFolder mummerPath If you are running on server computer and would like to use multiple threads, then the following commands can generate 20 threads to run FinisherSC. python finisherSC.py -par 20 destinedFolder mummerPath S...Tags: FinisherSC, repeat-aware, tool, upgrading, de novo, assembly, long, reads
2097 days ago