Results for "user"
Bio-Scripts
...seqFile\n"; $outFile = $seqFile; # Create $outFile name $outFile =~ s/\.fa/\.polyA\.out/; # s/old/new/; #User can process these files as pe...2931 days ago
Perl script to Mutate a DNA Sequence
...s not in the same directory of this script, enter the file name with its full path. # Example: # In windows: c:\rnafile.txt # In Linux : /home/user/sequence/rnafile.txt use F...2931 days ago
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...t available in the same directory of this script, enter the name of the file along with the path. In windows: c:\dnafile.txt, In Linux: /home/user/sequence/dnafile.txt print...2931 days ago
A multilayer perceptron (MLP) neural network in Perl
...idden neurons #Linear output neuron #To include an input bias create an #extra input in the training data #and set to 1 ################ User settings ######### my $numEp...2931 days ago
- ...#Define the arguments my ($seqfile, $second, $outfile, $dotfile, $word, $step, $pixels, $title, $help); #Perform Checking -- remind the user that TMTOWTDI. if (!GetO...
2708 days ago
BASH script for SelfBLAST a genome
...edContigs.fasta MYDB=myDB OUTFILE=seeRES THREAD=20 SEQ="" echo "User $USER provided $# arguments, Detail...uence to blast" SEQ=$FASTAFILE else echo "Something went wrong $USER - Contact jitendra" fi ec...2667 days ago
Download the genome from NCBI using bash script/command
...ad the genome from NCBI using command # Create a Directory mkdir genome cd genome # Look for genome assembly summary and extract the URL # USER need to provide the right sum...2547 days ago
Download the gff files from NCBI using bash script/command
...enome from NCBI using command # Create a Directory mkdir genome_gff cd genome_gff # Look for genome assembly summary and extract the URL # USER need to provide the right sum...2538 days ago
Extract the values between to user defined string with Perl
#!/usr/bin/perl -w use strict; while () { process_record() if /^\s*START/; } sub process_record { my $line; while (defined ($line = ) and $line...2308 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here my $seqfile=...2155 days ago
