Results for "vg"
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RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012) Nature Protocols In this tutorial we cover the concepts of RNA-Seq different...3666 days ago
irishgrid: Irish Grid Mapping System
Perl module for creating geographic 10km-square maps using either SVG or PNG (with GD library) output format. Originally design to map the location of objects in a 10 km map IrishG...3431 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
...conditional exclusive compression, namely using a FCM (Markov model), of high context order (typically 20). For visualisation, Smash outputs a SVG image, with an ideogramo...2944 days ago
- ...without requiring round-trips to servers and without plugins. GoJS normally runs completely in the browser, rendering to an HTML5 Canvas element or SVG without any server-side requi...
2734 days ago
Genome Annotation Transfer Utility (GATU)
...le step. ORFs present in the target genome and absent from the reference genome are also identified; these ORFs can be further analyzed using BLAST, VGO and BBB. Afterwards, they ca...2546 days ago
Genetic-mapper: SVG Genetic Map Drawer
...publication-ready vectorial genetic maps. Perl script for creating a publication-ready vectorial genetic/linkage map in Scalable Vector Graphics (SVG) format. The resulting file c...2526 days ago
- ...sp;and TRF output, SAM/BAM files, VCF-encoded SNPs, tab-delimited files Outputs publication-ready figures in the SVG (Scalable Vector Graphic...
2519 days ago
slacTree: SVG Large Annotated Circular Tree drawing
...1000 taxa with custom annotations Because it is a single Perl script with very few dependencies, it is easy to run, and easy to further customize SVG is used because it is a scala...2511 days ago
SMASH: An alignment-free tool to find and visualise rearrangements between pairs of DNA sequences
...kov model, of high context order (typically 20). The method has been approached with a tool (also called SMASH). For visualization, SMASH outputs a SVG image, with an ideogram outpu...2340 days ago
- ...ve display biological data on the web. It implements a raster-based SVG visualization using the...ay background and axis circles. Tooltips showing detailed information of SVG elements are also provided....
2311 days ago
